Architecture Exploration of FPGA Based Accelerators for BioInformatics Applications

1. Introduction
B. Sharat Chandra Varma, Kolin Paul, M. Balakrishnan

2. Related Work
B. Sharat Chandra Varma, Kolin Paul, M. Balakrishnan

3. Methodology for Implementing Accelerators
B. Sharat Chandra Varma, Kolin Paul, M. Balakrishnan

4. FPGA-Based Acceleration of Protein Docking
B. Sharat Chandra Varma, Kolin Paul, M. Balakrishnan

5. FPGA-Based Acceleration of De Novo Genome Assembly
B. Sharat Chandra Varma, Kolin Paul, M. Balakrishnan

6. Design of Accelerators with Hard Embedded Blocks
B. Sharat Chandra Varma, Kolin Paul, M. Balakrishnan

7. System-Level Design Space Exploration
B. Sharat Chandra Varma, Kolin Paul, M. Balakrishnan

8. Future Directions
B. Sharat Chandra Varma, Kolin Paul, M. Balakrishnan

Nyckelord: Engineering, Circuits and Systems, Computational Biology/Bioinformatics, Electronics and Microelectronics, Instrumentation