Frontiers of Computational Science

1. Computational Methods Combining Large Eddy Simulation with Approximate Wall-Layer Models for Predicting Separated Turbulent Near-Wall Flows
Michael A. Leschziner, Ning Li, Fabrizio Tessicini

2. Numerical Experimentation: A Third Way to Study Nature
Marie Farge

3. Recent Computational Developments in Quantum Conductance and Field Emission of Carbon Nanotubes
Jisoon Ihm

4. Energy Landscapes of Protein Self-Assembly: Lessons from Native Topology-Based Models
Yaakov Levy, José N. Onuchic

5. A Brief Introduction to Krylov Space Methods for Solving Linear Systems
Martin H. Gutknecht

6. Recent Developments in DNS and Modeling of Rotating Wall-Turbulent Shear Flows with Heat Transfer
Yasutaka Nagano, Hirofumi Hattori

7. Contribution of Computational Biology and Structural Genomics to Understand Genome and Transcriptome
Mitiko Go, Kei Yura, Masafumi Shionyu

8. Achromatic and Chromatic Visual Information Processing and Discrete Wavelets
Hitoshi Arai

9. On Decaying Two-Dimensional Turbulence in a Circular Container
Kai Schneider, Marie Farge

10. A Study Toward Improving Accuracy of Large Scale Industrial Turbulent Flow Computations
Kazuhiko Suga

11. Direct Numerical Simulations of Turbulent Premixed Flames with Realistic Kinetic Mechanisms
Mamoru Tanahashi, Yuzuru Nada, Nobuhiro Shiwaku, Toshio Miyauchi

12. Variational Monte Carlo Studies of Superconductivity in ?-BEDT-TTF Salts
Tsutomu Watanabe, Hisatoshi Yokoyama, Yukio Tanaka, Jun-ichiro Inoue

13. Simulation for Measurements of Electric Properties of Surface Nanostructures
Satoshi Watanabe, Ryoji Suzuki, Tomofumi Tada, Hideomi Totsuka

14. Ultra-Fast Dynamics in Nanocarbon Explored by TDDFT-MD Simulations
Yoshiyuki Miyamoto

15. Heat Transport in Nanoscale Objects: Classical to Quantum
Takahiro Yamamoto, Naoaki Kondo, Kazuyuki Watanabe, Yingwen Song, Satoshi Watanabe

16. Aromaticity Driven Rupture of CN and CC Multiple Bonds
Cherumuttathu H. Suresh, Nobuaki Koga

17. Protein Function Prediction in Proteomics Era
Daisuke Kihara, Troy Hawkins, Stan Luban, Bin Li, Karthik Ramani, Manish Agrawal

18. What We can Learn about Protein Folding from Recent Progress in Structure Prediction
George Chikenji, Yoshimi Fujitsuka, Shoji Takada

19. Brownian Dynamics Approach to Protein Folding
Tadashi Ando, Ichiro Yamato

20. A Fourth Type of Secondary Structure Breaker
Kenichiro Imai, Masashi Sonoyama, Shigeki Mitaku

21. Neighborhood Parallel Simulated Annealing
Keiko Ando, Mitsunori Miki, Tomoyuki Hiroyasu

22. New Computing System Architecture for Simulation of Biological Signal Transduction Networks
Hitoshi Hemmi, Tetsuya Maeshiro, Katsunori Shimohara

23. Convergence Analysis of GMRES Methods for Least Squares Problems
Ken Hayami, Tokushi Ito

24. A Numerical Method for Calculating the Green's Function Arising from Electronic Structure Theory
Tomohiro Sogabe, Takeo Hoshi, Shao-Liang Zhang, Takeo Fujiwara

25. Direct Numerical Simulation of Turbulent Channel Flow Imposed with Spanwise Couette Flow
Yohji Seki, Kaoru Iwamoto, Hiroshi Kawamura

26. Reynolds-Number Dependence of Transport Barriers in Chaotic Mixing
Yoshinori Mizuno, Mitsuaki Funakoshi

27. On the Treatment of Long-range Electrostatic Interactions in Biomolecular Simulations
Yoshiteru Yonetani

28. DNS of Turbulent Channel Flow Obstructed by Rectangular Ribs
Fusao Kawamura, Yohji Seki, Kaoru Iwamoto, Hiroshi Kawamura

29. Source Models of Gravity Waves in an F-plane Shallow Water System
Norihiko Sugimoto, Keiichi Ishioka, Katsuya Ishii

30. Direct Numerical Simulation of Neutrally Stratified Ekman Boundary Layer
Katsuhiro Miyashita, Kaoru Iwamoto, Hiroshi Kawamura

31. Application of the Renormalization Group Analysis to a Noisy Kuramoto–Sivashinsky Equation and its Numerical Simulation
Kazuto Ueno

32. Wavelet-Based Statistics in High-Resolution Direct Numerical Simulations of Three-Dimensional Homogeneous Isotropic Turbulence
Naoya Okamoto, Katsunori Yoshimatsu, Yukio Kaneda

33. Hydrophobic Hydration on Nanometer Length Scale
Takeshi Hotta, Masaki Sasai

34. Ultra-Fast Genome Wide Simulation of Biological Signal Transduction Networks: Starpack
Tetsuya Maeshiro, Hitoshi Hemmi, Katsunori Shimohara

35. Molecular Dynamics Study on Interaction of C-Component Dislocation Loop and Edge Dislocation in a-Zirconium
Kenji Yamaura, Akiyuki Takahashi, Masanori Kikuchi

36. Theoretical Analysis of Intramolecular Interaction
Kenta Yamada, Nobuaki Koga

37. Effect of Nanoscale Structure of Solid Surface on Moving Droplet
Takuma Osawa, Ichiro Ueno

38. Proximity Effect in NS Junctions in the Presence of Anderson Impurities
Takehito Yokoyama, Yukio Tanaka, Alexander A. Golubov

39. Wiedemann–Franz Law in Diffusive Normal Metal/p-Wave Superconductor Junctions
Takehito Yokoyama, Yukio Tanaka, Alexander A. Golubov, Yasuhiro Asano

40. Nodal Structures of Wave Functions in Chaotic Billiards
Hiromu Ishio

41. Elongation of Water Residence Time at the Protein Interior in Aqueous Solution with Ectoine
Isseki Yu, Masataka Nagaoka

42. Analytical Model for Protein Folding
Yoko Suzuki, José N. Onuchic

43. Theoretical Research on Dynamics of the Genetic Toggle Switch
Tomohiro Ushikubo, Wataru Inoue, Mitsumasa Yoda, Masaki Sasai

44. Non-Condon Theory for the Energy Gap Dependence of Electron Transfer Rate
Hirotaka Nishioka, Akihiro Kimura, Takahisa Yamato, Toshiaki Kakitani

45. Density Functional Molecular Orbital Calculations on Longer DNA–DNA and PNA–DNA Double Strands
Takayuki Natsume, Yasuyuki Ishikawa, Kenichi Dedachi, Noriyuki Kurita

46. A Parallel Computing Framework for Nonexperts of Computers: Easy Installation, Programming and Execution of Master–Worker Applications Using Spare Computing Power of PCs
Takashi Noda, Hisaya Mine, Noriyuki Fujimoto, Kenichi Hagihara

47. Derivation of TIS for Search Performance Quantification on HC Method
Naotoshi Hoshiya, Tomohiro Yoshikawa

48. Improvement of Search Performance of Genetic Algorithm Through Visualization of Search Process
Daisuke Yamashiro, Tomohiro Yoshikawa, Takeshi Furuhashi

49. A Proposal for Analysis of SD Evaluation Data by Using Clustering Method Focused on Data Distribution
Shou Kuroda, Kosuke Yamamoto, Tomohiro Yoshikawa, Takeshi Furuhashi

50. Multiobjective Evolutionary RBF Networks and Its Application to Ensemble Learning
Nobuhiko Kondo, Toshiharu Hatanaka, Katsuji Uosaki

51. A New Concept of Cerebral Autoregulation Using Mathematical Expressions
Tomoki Youkey Shiozawa, Hiroki Takada, Masaru Miyao

52. Evolution Strategies on Desktop Grid Environment Using Scheduling Algorithms RR for Same Length Tasks
Yoshiyuki Matsumura, Noriyuki Fujimoto, Xin Yao, Yoshikazu Murayama, Kenichi Hagihara

53. Solution of Black-Scholes Equation By Using RBF Approximation
Zhai Fei, Yumi Goto, Eisuke Kita

54. Visualization of Differences on Two Subjects' Impression Words Based on Correlation of SD Data
Teruyuki Kojima, Takeshi Furuhashi, Tomohiro Yoshikawa, Kosuke Yamamoto

55. Evaluation of High Imaging Quality LCDs Which Features Moving Picture: Comparison using Stabilometers
Kazuhiro Fujikake, Koichi Miura, Takahiro Sakurai, Hiroki Takada, Satoshi Hasegawa, Masako Omori, Ryumon Honda, Masaru Miyao

56. Template Translation for Multilingual Disaster Information System
Shozo Tanaka, Masaru Miyao, Kohei Okamoto, Satoshi Hasegawa

57. An Application of Double-Wayland Algorithm to Detect Anomalous Signals
Hiroki Takada, Hitoshi Tsunashima, Daishi Yamazaki, Tomoki Youkey Shiozawa, Meiho Nakayama, Takayuki Morimoto, Masaru Miyao

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