Protein Function Prediction for Omics Era

1. Computational Protein Function Prediction: Framework and Challenges
Meghana Chitale, Daisuke Kihara

2. Enhanced Sequence-Based Function Prediction Methods and Application to Functional Similarity Networks
Meghana Chitale, Daisuke Kihara

3. Gene Cluster Prediction and Its Application to Genome Annotation
Vikas Rao Pejaver, Heewook Lee, Sun Kim

4. Functional Inference in Microbial Genomics Based on Large-Scale Comparative Analysis
Ikuo Uchiyama

5. Predicting Protein Functional Sites with Phylogenetic Motifs: Past, Present and Beyond
Dennis R. Livesay, Dukka Bahadur KC, David La

6. Exploiting Protein Structures to Predict Protein Functions
Alison Cuff, Oliver Redfern, Benoit Dessailly, Christine Orengo

7. Sequence Order Independent Comparison of Protein Global Backbone Structures and Local Binding Surfaces for Evolutionary and Functional Inference
Joe Dundas, Bhaskar DasGupta, Jie Liang

8. Protein Binding Ligand Prediction Using Moments-Based Methods
Rayan Chikhi, Lee Sael, Daisuke Kihara

9. Computational Methods for Predicting DNA-Binding Sites at a Genomic Scale
Shandar Ahmad

10. Electrostatic Properties for Protein Functional Site Prediction
Joslynn S. Lee, Mary Jo Ondrechen

11. Function Prediction of Genes: From Molecular Function to Cellular Function
Kengo Kinoshita, Takeshi Obayashi

12. Predicting Gene Function Using Omics Data: From Data Preparation to Data Integration
Weidong Tian, Xinran Dong, Yuanpeng Zhou, Ren Ren

13. Protein Function Prediction Using Protein–Protein Interaction Networks
Hon Nian Chua, Guimei Liu, Limsoon Wong

14. KEGG and GenomeNet Resources for Predicting Protein Function from Omics Data Including KEGG PLANT Resource
Toshiaki Tokimatsu, Masaaki Kotera, Susumu Goto, Minoru Kanehisa

15. Towards Elucidation of the Escherichia coli K-12 Unknowneome
Yukako Tohsato, Natsuko Yamamoto, Toru Nakayashiki, Rikiya Takeuchi, Barry L. Wanner, Hirotada Mori

Avainsanat: Biomedicine, Biomedicine general, Biochemistry, general, Proteomics, Bioinformatics, Biotechnology