Parameter Advising for Multiple Sequence Alignment

1. Introduction and Background
Dan DeBlasio, John Kececioglu

Part I. Foundations of Parameter Advising

2. Alignment Accuracy Estimation
Dan DeBlasio, John Kececioglu

3. The Facet Accuracy Estimator
Dan DeBlasio, John Kececioglu

4. Computational Complexity of Advising
Dan DeBlasio, John Kececioglu

5. Constructing Advisors
Dan DeBlasio, John Kececioglu

Part II. Applications of Parameter Advising

6. Parameter Advising for the Opal Aligner
Dan DeBlasio, John Kececioglu

7. Ensemble Multiple Alignment
Dan DeBlasio, John Kececioglu

8. Adaptive Local Realignment
Dan DeBlasio, John Kececioglu

9. Core Column Prediction for Alignments
Dan DeBlasio, John Kececioglu

10. Future Directions
Dan DeBlasio, John Kececioglu

Avainsanat: Computer Science, Computational Biology/Bioinformatics, Bioinformatics, Algorithm Analysis and Problem Complexity, Algorithms, Discrete Optimization