10th International Conference on Practical Applications of Computational Biology & Bioinformatics

Part I. Data and Text Mining

1. Intelligent Systems for Predictive Modelling in Cheminformatics: QSPR Models for Material Design Using Machine Learning and Visual Analytics Tools
F. Cravero, M. J. Martinez, G. E. Vazquez, M. F. Díaz, I. Ponzoni

2. Virtual Screening: A Challenge for Deep Learning
Javier Pérez-Sianes, Horacio Pérez-Sánchez, Fernando Díaz

3. A Primary Study on Application of Artificial Neural Network in Classification of Pediatric Fracture Healing Time of the Lower Limb
Sorayya Malek, R. Gunalan, S. Y. Kedija, C. F. Lau, Mogeeb A. A. Mosleh, Pozi Milow, H. Amber, A. Saw

4. Visual Exploratory Assessment of Class C GPCR Extracellular Domains Discrimination Capabilities
Martha I. Cárdenas, Alfredo Vellido, Jesús Giraldo

5. Development of a Machine Learning Framework for Biomedical Text Mining
Ruben Rodrigues, Hugo Costa, Miguel Rocha

6. Sequence Retriever for Known, Discovered, and User-Specified Molecular Fragments
S. Sagar, J. Sidorova

Part II. Gene Expression

7. Sensitivity, Specificity and Prioritization of Gene Set Analysis When Applying Different Ranking Metrics
Joanna Zyla, Michal Marczyk, Joanna Polanska

8. Deep Data Analysis of a Large Microarray Collection for Leukemia Biomarker Identification
Wojciech Labaj, Anna Papiez, Joanna Polanska, Andrzej Polanski

9. Cancer Detection Using Co-Training of SNP/Gene/MiRNA Expressions Classifiers
Reham Mohamed, Nagia M. Ghanem, Mohamed A. Ismail

10. Systematic Evaluation of Gene Expression Data Analysis Methods Using Benchmark Data
Henry Yang

11. A Clustering-Based Method for Gene Selection to Classify Tissue Samples in Lung Cancer
José A. Castellanos-Garzón, Juan Ramos, Alfonso González-Briones, Juan F. Paz

12. Large-Scale Transcriptomic Approaches for Characterization of Post-Transcriptional Control of Gene Expression
Laura Souto, Alfonso González-Briones, Andreia J. Amaral, Margarida Gama-Carvalho, Juan F. Paz

Part III. Genomics

13. FLAK: Ultra-Fast Fuzzy Whole Genome Alignment
John Healy

14. Exploring the High Performance Computing-Enablement of a Suite of Gene-Knockout Based Genetic Engineering Applications
Zhenya Li, Richard O. Sinnott, Yee Wen Choon, Muhammad Farhan Sjaugi, Mohd Saberi Mohammad, Safaai Deris, Suhaimi Napis, Sigeru Omatu, Juan Manuel Corchado, Zuwairie Ibrahim, Zulkifli Md Yusof

15. RUbioSeq+: An Application that Executes Parallelized Pipelines to Analyse Next-Generation Sequencing Data
Miriam Rubio-Camarillo, Hugo López-Fernández, Gonzalo Gómez-López, Ángel Carro, José María Fernández, Florentino Fdez-Riverola, Daniel Glez-Peña, David G. Pisano

16. Exceptional Symmetry Profile: A Genomic Word Analysis
Vera Afreixo, João M. O. S. Rodrigues, Carlos A. C. Bastos, Raquel M. Silva

17. A Computation Tool for the Estimation of Biomass Composition from Genomic and Transcriptomic Information
Sophia Santos, Isabel Rocha

Part IV. Systems Biology

18. Role of Nerve Growth Factor Signaling in Cancer Cell Proliferation and Survival Using a Reachability Analysis Approach
Gustavo Santos-García, Carolyn Talcott, Adrián Riesco, Beatriz Santos-Buitrago, Javier Las Rivas

19. A Hybrid of Harmony Search and Minimization of Metabolic Adjustment for Optimization of Succinic Acid Production
Nor Syahirah Abdul Wahid, Mohd Saberi Mohamad, Abdul Hakim Mohamed Salleh, Safaai Deris, Weng Howe Chan, Sigeru Omatu, Juan Manuel Corchado, Muhammad Farhan Sjaugi, Zuwairie Ibrahim, Zulkifli Md. Yusof

20. Development of an Integrated Framework for Minimal Cut Set Enumeration in Constraint-Based Models
Vítor Vieira, Paulo Maia, Isabel Rocha, Miguel Rocha

21. SCENERY: A Web-Based Application for Network Reconstruction and Visualization of Cytometry Data
Giorgos Athineou, Giorgos Papoutsoglou, Sofia Triantafillou, Ioannis Basdekis, Vincenzo Lagani, Ioannis Tsamardinos

22. Reconstruction of Metabolic Models for Liver Cancer Cells
Jorge Ferreira, Sara Correia, Miguel Rocha

Avainsanat: Engineering, Computational Intelligence, Artificial Intelligence (incl. Robotics), Computational Biology/Bioinformatics