Workflows for e-Science

1. Introduction
Dennis Gannon, Ewa Deelman, Matthew Shields, Ian Taylor

2. Scientific versus Business Workflows
Roger Barga, Dennis Gannon

Part I. Application and User Perspective

3. Generating Complex Astronomy Workflows
G. Bruce Berriman, Ewa Deelman, John Good, Joseph C. Jacob, Daniel S. Katz, Anastasia C. Laity, Thomas A. Prince, Gurmeet Singh, Mei-Hui Su

4. A Case Study on the Use of Workflow Technologies for Scientific Analysis: Gravitational Wave Data Analysis
Duncan A. Brown, Patrick R. Brady, Alexander Dietz, Junwei Cao, Ben Johnson, John McNabb

5. Workflows in Pulsar Astronomy
John Brooke, Stephen Pickles, Paul Carr, Kramer Michael

6. Workflow and Biodiversity e-Science
Andrew C. Jones

7. Ecological Niche Modeling Using the Kepler Workflow System
Deana D. Pennington, Dan Higgins, A. Townsend Peterson, Matthew B. Jones, Bertram Ludäscher, Shawn Bowers

8. Case Studies on the Use of Workflow Technologies for Scientific Analysis: The Biomedical Informatics Research Network and the Telescience Project
Abel W. Lin, Steven T. Peltier, Jeffrey S. Grethe, Mark H. Ellisman

9. Dynamic, Adaptive Workflows for Mesoscale Meteorology
Dennis Gannon, Beth Plale, Suresh Marru, Gopi Kandaswamy, Yogesh Simmhan, Satoshi Shirasuna

10. SCEC CyberShake Workflows—Automating Probabilistic Seismic Hazard Analysis Calculations
Philip Maechling, Ewa Deelman, Li Zhao, Robert Graves, Gaurang Mehta, Nitin Gupta, John Mehringer, Carl Kesselman, Scott Callaghan, David Okaya, Hunter Francoeur, Vipin Gupta, Yifeng Cui, Karan Vahi, Thomas Jordan, Edward Field

Part II. Workflow Representation and Common Structure

11. Control- Versus Data-Driven Workflows
Matthew Shields

12. Component Architectures and Services: From Application Construction to Scientific Workflows
Dennis Gannon

13. Petri Nets
Andreas Hoheisel, Martin Alt

14. Adapting BPEL to Scientific Workflows
Aleksander Slominski

15. Protocol-Based Integration Using SSDL and p-Calculus
Simon Woodman, Savas Parastatidis, Jim Webber

16. Workflow Composition: Semantic Representations for Flexible Automation
Yolanda Gil

17. Virtual Data Language: A Typed Workflow Notation for Diversely Structured Scientific Data
Yong Zhao, Michael Wilde, Ian Foster

Part III. Frameworks and Tools: Workflow Generation, Refinement, and Execution

18. Workflow-Level Parametric Study Support by MOTEUR and the P-GRADE Portal
Tristan Glatard, Gergely Sipos, Johan Montagnat, Zoltan Farkas, Peter Kacsuk

19. Taverna/myGrid: Aligning a Workflow System with the Life Sciences Community
Tom Oinn, Peter Li, Douglas B. Kell, Carole Goble, Antoon Goderis, Mark Greenwood, Duncan Hull, Robert Stevens, Daniele Turi, Jun Zhao

20. The Triana Workflow Environment: Architecture and Applications
Ian Taylor, Matthew Shields, Ian Wang, Andrew Harrison

21. Java CoG Kit Workflow
Gregor Laszewski, Mihael Hategan, Deepti Kodeboyina

22. Workflow Management in Condor
Peter Couvares, Tevfik Kosar, Alain Roy, Jeff Weber, Kent Wenger

23. Pegasus: Mapping Large-Scale Workflows to Distributed Resources
Ewa Deelman, Gaurang Mehta, Gurmeet Singh, Mei-Hui Su, Karan Vahi

24. ICENI
A. Stephen McGough, William Lee, Jeremy Cohen, Eleftheria Katsiri, John Darlington

25. Expressing Workflow in the Cactus Framework
Tom Goodale

26. Sedna: A BPEL-Based Environment for Visual Scientific Workflow Modeling
Bruno Wassermann, Wolfgang Emmerich, Ben Butchart, Nick Cameron, Liang Chen, Jignesh Patel

27. ASKALON: A Development and Grid Computing Environment for Scientific Workflows
Thomas Fahringer, Radu Prodan, Rubing Duan, Jüurgen Hofer, Farrukh Nadeem, Francesco Nerieri, Stefan Podlipnig, Jun Qin, Mumtaz Siddiqui, Hong-Linh Truong, Alex Villazon, Marek Wieczorek

Part IV. Future Requirements

28. Looking into the Future of Workflows: The Challenges Ahead
Ewa Deelman

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Avainsanat: COMPUTERS / Computer Science COM014000