E-Cell System

Part 1. Basic Concepts

1. Introduction to Whole Cell Modeling
Pawan K. Dhar

2. Foundations of E-Cell Simulation Environment Architecture
Nathan Addy, Koichi Takahashi

3. Distributed Cell Biology Simulations with the E-Cell System
Masahiro Sugimoto

4. A Guide to Modeling Reaction-Diffusion of Molecules with the E-Cell System
Satya Nanda Vel Arjunan

PArt 2. Applications

5. A Model Library of Bacterial Chemotaxis on E-Cell System
Yuri Matsuzaki

6. Electrophysiological Simulation of Developmental Changes in Action Potentials of Cardiomyocytes
Hitomi Itoh

7. Simulation of Human Erythrocyte Metabolism
Ayako Kinoshita

8. Dynamic Kinetic Modeling of Mitochondrial Energy Metabolism
Katsuyuki Yugi

9. A Computational Model of the Hepatic Lobule
Yasuhiro Naito

10. Decoding the Signaling Mechanism of Toll-Like Receptor 4 Pathways in Wild Type and Knockouts
Kumar Selvarajoo

11. Modeling of Hsp70-Mediated Protein Refolding
Bin Hu, Matthias P. Mayer, Masaru Tomita

Avainsanat: Biomedicine, Molecular Medicine, Biomedicine general