Photosynthesis in silico

I. General Problems of Biological Modeling

1. Trends and Tools for Modeling in Modern Biology
Michael Hucka, James Schaff

2. Scaling and Integration of Kinetic Models of Photosynthesis: Towards Comprehensive E-Photosynthesis
Ladislav Nedbal, Jan Červený, Henning Schmidt

II. Modeling of Light Harvesting and Primary Charge Separation

3. Modeling Light Harvesting and Primary Charge Separation in Photosystem I and Photosystem II
Rienk Grondelle, Vladimir I. Novoderezhkin, Jan P. Dekker

4. Unraveling the Hidden Nature of Antenna Excitations
Arvi Freiberg, Gediminas Trinkunas

III. Modeling Electron Transport and Chlorophyll Fluorescence

5. Models of Chlorophyll a Fluorescence Transients
Dušan Lazár, Gert Schansker

6. Modeling of Chlorophyll a Fluorescence Kinetics in Plant Cells: Derivation of a Descriptive Algorithm
Wim Vredenberg, Ondřej Prášil

7. Modeling of the Primary Processes in a Photosynthetic Membrane
Andrew Rubin, Galina Riznichenko

8. Clustering of Electron Transfer Components: Kinetic and Thermodynamic Consequences
Jérôme Lavergne

IV. Integrated Modeling of Light and Dark Reactions of Photosynthesis

9. Biochemical Model of C3 Photosynthesis
Susanne Caemmerer, Graham Farquhar, Joseph Berry

10. Modeling the Temperature Dependence of C3 Photosynthesis
Carl J. Bernacchi, David M. Rosenthal, Carlos Pimentel, Stephen P. Long, Graham D. Farquhar

11. A Model of the Generalized Stoichiometry of Electron Transport Limited C3 Photosynthesis: Development and Applications
Xinyou Yin, Jeremy Harbinson, Paul C. Struik

12. Modeling the Kinetics of Activation and Reaction of Rubisco from Gas Exchange
Hadi Farazdaghi

13. Leaf C3 Photosynthesis in silico: Integrated Carbon/Nitrogen Metabolism
Agu Laisk, Hillar Eichelmann, Vello Oja

14. Leaf C4 Photosynthesis in silico: The CO2 Concentrating Mechanism
Agu Laisk, Gerald Edwards

15. Flux Control Analysis of the Rate of Photosynthetic CO2 Assimilation
Ian E. Woodrow

V. From Leaves to Canopies to the Globe

16. Packing the Photosynthetic Machinery: From Leaf to Canopy
Ülo Niinemets, Niels P. R. Anten

17. Can Increase in Rubisco Specificity Increase Carbon Gain by Whole Canopy? A Modeling Analysis
Xin-Guang Zhu, Stephen P. Long

18. Role of Photosynthetic Induction for Daily and Annual Carbon Gains of Leaves and Plant Canopies
Manfred Küppers, Michael Pfiz

19. Photosynthesis Within Large-Scale Ecosystem Models
Stephan A. Pietsch, Hubert Hasenauer

20. Photosynthesis in Global-Scale Models
Andrew D. Friend, Richard J. Geider, Michael J. Behrenfeld, Christopher J. Still

Avainsanat: Life Sciences, Plant Sciences, Plant Biochemistry, Plant Physiology