Genomics of Plant Genetic Resources

Part III. Genome Sequencing and Crop Domestication

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1. Building a Global Plant Genetic Resources System
Emile Frison, Nicole Demers

2. Genomic Approaches and Intellectual Property Protection for Variety Release: A Perspective from the Private Sector
J. Stephen C. Smith, Elizabeth S. Jones, Barry K. Nelson, Debora S. Phillips, Robin A. Wineland

3. The Use of Molecular Marker Data to Assist in the Determination of Essentially Derived Varieties
J Stephen C. Smith, Elizabeth S. Jones, Barry K. Nelson

4. Application of Molecular Markers in Spatial Analysis to Optimize In Situ Conservation of Plant Genetic Resources
Maarten Zonneveld, Ian Dawson, Evert Thomas, Xavier Scheldeman, Jacob Etten, Judy Loo, José I Hormaza

5. Historical and Prospective Applications of ‘Quantitative Genomics’ in Utilising Germplasm Resources
Adrian Hathorn, Scott C. Chapman

6. High-throughput SNP Profiling of Genetic Resources in Crop Plants Using Genotyping Arrays
Martin W. Ganal, Ralf Wieseke, Hartmut Luerssen, Gregor Durstewitz, Eva-Maria Graner, Joerg Plieske, Andreas Polley

7. Paleogenomics as a Guide for Traits Improvement
Jérôme Salse

8. Non-invasive Phenotyping Methodologies Enable the Accurate Characterization of Growth and Performance of Shoots and Roots
Marcus Jansen, Francisco Pinto, Kerstin A. Nagel, Dagmar Dusschoten, Fabio Fiorani, Uwe Rascher, Heike U. Schneider, Achim Walter, Ulrich Schurr

9. Association Mapping of Genetic Resources: Achievements and Future Perspectives
Sivakumar Sukumaran, Jianming Yu

10. Exploiting Barley Genetic Resources for Genome Wide Association Scans (GWAS)
Robbie Waugh, Andrew J. Flavell, Joanne Russell, William (Bill) Thomas, Luke Ramsay, Jordi Comadran

11. Production and Molecular Cytogenetic Identification of Wheat-Alien Hybrids and Introgression Lines
Márta Molnár-Láng, István Molnár, Éva Szakács, Gabriella Linc, Zoltán Bedö

12. Radiation Hybrids: A valuable Tool for Genetic, Genomic and Functional Analysis of Plant Genomes
Ajay Kumar, Filippo M. Bassi, Monika K. Michalak de Jimenez, Farhad Ghavami, Mona Mazaheri, Kristin Simons, Muhammad J. Iqbal, Mohamed Mergoum, Shahryar F. Kianian, Penny M.A. Kianian

13. FISHIS: A New Way in Chromosome Flow Sorting Makes Complex Genomes More Accessible
Sergio Lucretti, Debora Giorgi, Anna Farina, Valentina Grosso

14. Mining Genetic Resources via Ecotilling
Bradley J. Till

15. Next Generation Sequencing and Germplasm Resources
Paul Visendi, Jacqueline Batley, David Edwards

16. Advances in Sequencing the Barley Genome
Nils Stein, Burkhard Steuernagel

17. The Wheat Black Jack: Advances Towards Sequencing the 21 Chromosomes of Bread Wheat
Frédéric Choulet, Mario Caccamo, Jonathan Wright, Michael Alaux, Hana Šimková, Jan Šafář, Philippe Leroy, Jaroslav Doležel, Jane Rogers, Kellye Eversole, Catherine Feuillet

19. Molecular Evidence for Soybean Domestication
Kyujung Van, Moon Young Kim, Jin Hee Shin, Kyung Do Kim, Yeong-Ho Lee, Suk-Ha Lee

20. Genomics of Origin, Domestication and Evolution of Phaseolus vulgaris

Elisa Bellucci, Elena Bitocchi, Domenico Rau, Monica Rodriguez, Eleonora Biagetti, Alessandro Giardini, Giovanna Attene, Laura Nanni, Roberto Papa

Part IV. Mining Allelic Diversity

21. Advances in Nicotiana Genetic and “Omics” Resources
James N.D. Battey, Nicolas Sierro, Nicolas Bakaher, Nikolai V. Ivanov

22. Mining SNPs and Linkage Analysis in Cynara Cardunculus

Sergio Lanteri, Alberto Acquadro, Davide Scaglione, Ezio Portis

23. Genetic Diversity Assessment in European Cynara Collections
Mario Augusto Pagnotta, Arshiya Noorani

24. Analysis and Exploitation of Cereal Genomes with the Aid of Brachypodium

Hikmet Budak, Pilar Hernandez, Alan H. Schulman

25. Mining Natural Variation for Maize Improvement: Selection on Phenotypes and Genes
Shilpa Sood, Sherry Flint-Garcia, Martha C. Willcox, James B. Holland

26. Breeding Forest Trees by Genomic Selection: Current Progress and the Way Forward
Dario Grattapaglia

27. Genetic Diversity in the Grapevine Germplasm
Federica Cattonaro, Raffaele Testolin, Simone Scalabrin, Michele Morgante, Gabriele Di Gaspero

Keywords: Life Sciences, Life Sciences, general