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Ivanov, Alexander R.

Sample Preparation in Biological Mass Spectrometry

Ivanov, Alexander R. - Sample Preparation in Biological Mass Spectrometry, ebook

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ISBN: 9789400708280
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Table of contents

1. Gel-Based and Gel-Free Sample Preparation for LC-MS/MS Analysis
Xianyin Lai, Frank A. Witzmann

2. Manipulating the Mass Spectrometric Properties of Peptides through Selective Chemical Modification
David Arnott, Peter S. Liu, Patricia Molina, Lilian Phu, Wendy N. Sandoval

3. Sample Preparation for 2D Electrophoresis and CE-Based Proteomics
Judit M. Nagy, Alexandria Lipka, Fiona Pereira, Nicky Marlin, Stuart Hassard

4. Filtration as a Sample Preparation Technique Prior to Mass Spectrometry: Selecting the Right Filtration Device
Vivek Joshi, Elena Chernokalskaya

5. Pressure-Assisted Lysis of Mammalian Cell Cultures Prior to Proteomic Analysis
Emily A. Freeman, Alexander R. Ivanov

6. Multiplexed Preparation of Biological Samples for Mass Spectrometry Using Gel Electrophoresis
Jeremy L. Norris, Alan A. Doucette

7. Development of an On-Bead Digestion Procedure for Immunoprecipitated Proteins
Matthew J. Berberich, Jeffrey A. Kowalak, Anthony J. Makusky, Brian Martin, Detlef Vullhorst, Andres Buonanno, Sanford P. Markey

8. Ultra-Fast Sample Preparation for High-Throughput Proteomics
Daniel Lopez-Ferrer, Kim K. Hixson, Mikhail E. Belov, Richard D. Smith

9. Exploring the Capabilities of the Protein Identification by Unconventional Sample Preparation Approaches: LC/MALDI/On-Target Digestion Approach and High Pressure-Assisted In-Gel Tryptic Digestion
Melkamu Getie-Kebtie, Michail A. Alterman

10. Sample Preparation of Formalin-Fixed Paraffin-Embedded (FFPE) Tissue for Proteomic Analyses
Diem Tran, Mark Daniels, Ben Colson, Dikran Aivazian, Antonio Boccia, Ingrid Joseph, Steffan Ho, Steve French, Alex Buko, Jing Wei

11. Brain Proteomics: Sample Preparation Techniques for the Analysis of Rat Brain Samples Using Mass Spectrometry
Yoshinori Masuo, Misato Hirano, Junko Shibato, Hyung Wook Nam, Isabelle Fournier, Céline Mériaux, Maxence Wisztorski, Michel Salzet, Hideaki Soya, Ganesh Kumar Agrawal, Tetsuo Ogawa, Seiji Shioda, Randeep Rakwal

12. Subcellular Fractionation Using Step-Wise Density Extraction for Mass Spectrometry Analysis
WenKui Lan, Marc J. Horn, Fumihiko Urano, Andre Kopoyan, Sun W. Tam

13. Two-Dimensional Polyacrylamide Gel Electrophoresis
Aisling A. Robinson, Ciara A. McManus, Michael J. Dunn

14. Quantitative Intact Proteomic Strategies to Detect Changes in Protein Modification and Genomic Variation
David B. Friedman

15. Two-Dimensional Non-denaturing Gel Electrophoresis for Characterization of Proteins in Multi-molecular Particles by Mass Spectrometry
Susan T. Weintraub, Philip Serwer

16. Preanalytical Variables for Plasma and Serum Proteome Analyses
Craig A. Gelfand, Gilbert S. Omenn

17. Biomarker Discovery in Biological Fluids
Wasfi Alrawashdeh, Tatjana Crnogorac-Jurcevic

18. Sample Handling of Body Fluids for Proteomics
Joao A. Paulo, Ali R. Vaezzadeh, Darwin L. Conwell, Richard S. Lee, Hanno Steen

19. Quantitative Plant Proteomics Using Hydroponic Isotope Labeling of Entire Plants (HILEP)
Laurence V. Bindschedler, Celia J. Smith, Rainer Cramer

20. Efficient Strategies for Analysis of Low Abundance Proteins in Plant Proteomics
Olga A. Koroleva, Laurence V. Bindschedler

21. Plant Plasma Membrane Proteomics: Challenges and Possibilities
Anders Laurell Blom Møller, Katja Witzel, Annelies Vertommen, Vibeke Barkholt, Birte Svensson, Sebastien Carpentier, Hans-Peter Mock, Christine Finnie

22. Affinity and Chemical Enrichment for Mass Spectrometry-Based Proteomics Analyses
Guillaume O. Adelmant, Job D. Cardoza, Scott B. Ficarro, Timothy W. Sikorski, Yi Zhang, Jarrod A. Marto

23. A Multidimensional Chromatography Strategy Using HILIC and IMAC for Quantitative Phosphoproteome Analysis
Dean E. McNulty, Michael J. Huddleston, Roland S. Annan

24. Glycomic Analysis of Membrane-Associated Proteins
Diarmuid T. Kenny, Liaqat Ali, Samah Issa, Niclas G. Karlsson

25. Multi-lectin Affinity Chromatography (M-LAC) Combined with Abundant Protein Depletion for Analysis of Human Plasma in Clinical Proteomics Applications
Marina Hincapie, Tatiana Plavina, William S. Hancock

26. Analysis of Glycopeptides Using Porous Graphite Chromatography and LTQ Orbitrap XL ETD Hybrid MS
Terry Zhang, Rosa Viner, Zhiqi Hao, Vlad Zabrouskov

27. Stable Isotopic Labeling for Proteomics
Keith Ashman, María Isabel Ruppen Cañás, Jose L. Luque-Garcia, Fernando García Martínez

28. Standard Operating Procedures and Protocols for the Preparation and Analysis of Plasma Samples Using the iTRAQ Methodology
Leanne B. Ohlund, Darryl B. Hardie, Monica H. Elliott, Alexander G. Camenzind, Derek S. Smith, Jennifer D. Reid, Gabriela V. Cohen Freue, Axel P. Bergman, Mayu Sasaki, Lisa Robertson, Robert F. Balshaw, Raymond T. Ng, Alice Mui, Bruce M. McManus, Paul A. Keown, W. Robert McMaster, Carol E. Parker, Christoph H. Borchers

29. Methods for the Isolation of Phosphoproteins and Phosphopeptides for Mass Spectrometry Analysis: Toward Increased Functional Phosphoproteomics
Tapasree Goswami, Bryan A. Ballif

30. Adipose Tissue Lysis and Protein Extraction Followed by MS-based Proteomic Profiling Reveals Constituents of Oxidative Stress in Obesity
Emily A. Freeman, Vera Gross, Ilyana Romanovsky, Alexander V. Lazarev, Alexander R. Ivanov

31. Protocols for LC-MS/MS-Based Quantitative Analysis of Proteolytic Substrates from Complex Mixtures
Mari Enoksson, Miklós Békés, Laurence M. Brill, Khatereh Motamedchaboki

32. Mass Spectrometry-Based Proteomics Analyses of Integral Membrane Proteins
Eric Bonneil, Sylvain Brunet, Michel Jaquinod, Joseph P.M. Hui, Anik Forest, Pierre Thibault

33. Matrix-Assisted Laser Desorption/Ionization-Mass Spectrometry of Hydrophobic Proteins in Mixtures
Rachel R. Ogorzalek Loo

34. MALDI MS-Based Biomarker Profiling of Blood Samples
Ali Tiss, Celia J. Smith, Rainer Cramer

35. Sample Preparation in Biological Analysis by Atmospheric Pressure Matrix Assisted Laser/Desorption Ionization (AP-MALDI) Mass Spectrometry
Appavu K. Sundaram, Berk Oktem, Jane Razumovskaya, Shelley N. Jackson, Amina S. Woods, Vladimir M. Doroshenko

36. MALDI Imaging Mass Spectrometry for Investigating the Brain
Isabelle Fournier, Céline Mériaux, Maxence Wisztorski, Randeep Rakwal, Michel Salzet

37. UV MALDI for DNA Analysis and the Developments in Sample Preparation Methods
Igor P. Smirnov

38. Sample Preparation Techniques for Cancer Proteomics
Paul Dowling, Martin Clynes, Paula Meleady

39. Sample Preparation of Primary Astrocyte Cellular and Released Proteins for 2-D Gel Electrophoresis and Protein Identification by Mass Spectrometry
Melissa A. Sondej, Philip Doran, Joseph A. Loo, Ina-Beate Wanner

40. Mass Spectrometry-Based Metabolomics. Sample Preparation, Data Analysis, and Related Analytical Approaches
Oliver A.H. Jones, Lee D. Roberts, Mahon L. Maguire

41. Targeted Quantitative Analysis of Jasmonic Acid (JA) and Its Amino Acid Conjugates in Plant Using HPLC-Electrospray Ionization-Tandem Mass Spectrometry (ESI-LC-MS/MS)
Shigeru Tamogami, Ganesh Kumar Agrawal, Randeep Rakwal

42. Quantitative Analysis of Lipid Peroxidation Products Using Mass Spectrometry
Yasukazu Yoshida, Mototada Shichiri

43. Sample Preparation for Drug Metabolism Studies
Natalia Penner, Biplab Das, Caroline Woodward, Chandra Prakash

44. Development of Micro-scale Sample Preparation and Prefractionation Methods in LC-MS-Based Proteomic Studies
Lan Dai, Chen Li, David M. Lubman

45. Revisiting Jurassic Park: The Isolation of Proteins from Amber Encapsulated Organisms Millions of Years Old
Gary B. Smejkal, George O. Poinar, Pier Giorgio Righetti, Feixia Chu

46. Inactivation and Extraction of Bacterial Spores for Systems Biological Analysis
Bradford S. Powell, Robert J. Cybulski

47. New Developments in LC-MS and Other Hyphenated Techniques
Mikhail E. Belov, Ruwan Kurulugama, Daniel Lopez-Ferrer, Yehia Ibrahim, Erin Baker

48. Reversed-Phase HPLC of Peptides – A Valuable Sample Preparation Tool in Bottom-Up Proteomics: Separation Selectivity in Single and Multi-dimensional Separation Modes
Ravi C. Dwivedi, Vic Spicer, Oleg V. Krokhin

49. Applications of Microfluidic Devices with Mass Spectrometry Detection in Proteomics
Xiuli Mao, Iulia M. Lazar

Keywords: Chemistry, Analytical Chemistry, Mass Spectrometry, Biochemistry, general, Proteomics, Biomedicine general, Biophysics and Biological Physics

Author(s)
 
Publisher
Springer
Publication year
2011
Language
en
Edition
1
Page amount
29 pages
Category
Natural Sciences
Format
Ebook
eISBN (PDF)
9789400708280

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