Natural Computing

1. Combinatorial Optimization by Amoeba-Based Neurocomputer with Chaotic Dynamics
Masashi Aono, Yoshito Hirata, Masahiko Hara, Kazuyuki Aihara

2. Factorizing RSA Keys
Ed Blakey

3. Toward a Representation of Hybrid Functional Petri Nets by MP Systems
Alberto Castellini, Giuditta Franco, Vincenzo Manca

4. Computing with Feedforward Networks of Artificial Biochemical Neurons
Huub M. M. Eikelder, Sjoerd P. M. Crijns, Marvin N. Steijaert, Anthony M. L. Liekens, Peter A. J. Hilbers

5. Information Processing with Structured Chemical Excitable Medium
J. Gorecki, J. N. Gorecka, Y. Igarashi, K. Yoshikawa

6. Wholeness and Information Processing in Biological Networks: An Algebraic Study of Network Motifs
Taichi Haruna, Yukio-Pegio Gunji

7. Regulation Effects by Programmed Molecules for Transcription-Based Diagnostic Automata towards Therapeutic Use
Miki Hirabayashi, Hirotada Ohashi, Tai Kubo

8. On Detection and Isolation of Defective Cells in Self-Timed Cellular Automata
Teijiro Isokawa, Ferdinand Peper, Shin’ya Kowada, Naotake Kamiura, Nobuyuki Matsui

9. Towards the Sequence Design Preventing Pseudoknot Formation
Lila Kari, Shinnosuke Seki

10. Self-organized Spatio-temporal Oscillation Observed in a Chain of Non-oscillatory Cells
Yue Ma, Yoshiko Takenaka, Kenichi Yoshikawa

11. Exploiting Natural Asynchrony and Local Knowledge within Systemic Computation to Enable Generic Neural Structures
Erwan Martelot, Peter J. Bentley, R. Beau Lotto

12. Molecular Communication: Simulation of Microtubule Topology
Michael J. Moore, Akihiro Enomoto, Tadashi Nakano, Atsushi Kayasuga, Hiroaki Kojima, Hitoshi Sakakibara, Kazuhiro Oiwa, Tatsuya Suda

13. Monte Carlo Simulation in Lattice Ecosystem: Top-Predator Conservation and Population Uncertainty
Hiroyasu Nagata, Kei-ichi Tainaka, Nariyuki Nakagiri, Jin Yoshimura

14. Toward Biologically Inspired Constructive Computation
Hideyuki Nakashima

15. A Classification of Triplet Local Rules with Inverse Image Sequences
Tatsuro Sato, Kazumasa Honda, Hyen Yeal Lee, Yasuo Kawahara

16. An Efficient Multiple Alignment Method for RNA Secondary Structures Including Pseudoknots
Shinnosuke Seki, Satoshi Kobayashi

17. Asymmetric Interaction in Non-equilibrium Dissipative System towards Dynamics for Biological System
Yuki Sugiyama

18. Design and Numerical Analysis of RNA Oscillator
Masahiro Takinoue, Daisuke Kiga, Koh-ichiroh Shohda, Akira Suyama

19. Protoplasmic Computing to Memorize and Recall Periodic Environmental Events
Atsushi Tero, Tetsu Saigusa, Toshiyuki Nakagaki

20. A Synchronization Problem in Two-Dimensional Cellular Automata
Hiroshi Umeo

21. Information Exchange between Moving Particles and Defects
Takashi Teramoto, Kei-Ichi Ueda, Xiaohui Yuan, Yasumasa Nishiura

Keywords: COMPUTERS / Computer Science COM014000