Plant Systems Biology

1. Introduction to systems biology
Frank J. Bruggeman, Jorrit J. Hornberg, Fred C. Boogerd, Hans V. Westerhoff

2. Natural and artificially induced genetic variability in crop and model plant species for plant systems biology
Christophe Rothan, Mathilde Causse

3. Transcriptional profiling approaches to understanding how plants regulate growth and defence: A case study illustrated by analysis of the role of vitamin C
Christine H. Foyer, Guy Kiddle, Paul Verrier

4. Case studies for transcriptional profiling
Lars Hennig, Claudia Köhler

5. Regulatory small RNAs in plants
Cameron Johnson, Venkatesan Sundaresan

6. Differential display and protein quantification
Erich Brunner, Bertran Gerrits, Mike Scott, Bernd Roschitzki

7. Protein identification using mass spectrometry: A method overview
Sven Schuchardt, Albert Sickmann

8. Methods, applications and concepts of metabolite profiling: Primary metabolism
Dirk Steinhauser, Joachim Kopka

9. Methods, applications and concepts of metabolite profiling: Secondary metabolism
Lloyd W. Sumner, David V. Huhman, Ewa Urbanczyk-Wochniak, Zhentian Lei

10. Metabolic flux analysis: Recent advances in carbon metabolism in plants
Martine Dieuaide-Noubhani, Ana-Paula Alonso, Dominique Rolin, Wolfgang Eisenreich, Philippe Raymond

11. Network visualization and network analysis
Victoria J. Nikiforova, Lothar Willmitzer

12. Current challenges and approaches for the synergistic use of systems biology data in the scientific community
Christian H. Ahrens, Ulrich Wagner, Hubert K. Rehrauer, Can Türker, Ralph Schlapbach

13. Integrated data analysis for genome-wide research
Matthias Steinfath, Dirk Repsilber, Matthias Scholz, Dirk Walther, Joachim Selbig

14. Network analysis of systems elements
Daniel Schöner, Barkow Simon, Stefan Bleuler, Anja Wille, Philip Zimmermann, Peter Bühlmann, Wilhelm Gruissem, Eckart Zitzler

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Keywords: SCIENCE / Life Sciences / Biology / General SCI008000