Rocha, Miguel P.

Advances in Bioinformatics

Rocha, Miguel P. - Advances in Bioinformatics, ebook


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ISBN: 9783642132148
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Table of contents

1. Highlighting Differential Gene Expression between Two Condition Microarrays through Heterogeneous Genomic Data: Application to Lesihmania infantum Stages Comparison
Liliana López Kleine, Víctor Andrés Vera Ruiz

2. An Experimental Evaluation of a Novel Stochastic Method for Iterative Class Discovery on Real Microarray Datasets
Héctor Gómez, Daniel Glez-Peña, Miguel Reboiro-Jato, Reyes Pavón, Fernando Díaz, Florentino Fdez-Riverola

3. Automatic Workflow during the Reuse Phase of a CBP System Applied to Microarray Analysis
Juan F. Paz, Ana B. Gil, Emilio Corchado

4. A Comparative Study of Microarray Data Classification Methods Based on Ensemble Biological Relevant Gene Sets
Miguel Reboiro-Jato, Daniel Glez-Peña, Juan Francisco Gálvez, Rosalía Laza Fidalgo, Fernando Díaz, Florentino Fdez-Riverola

5. Predicting the Start of Protein α-Helices Using Machine Learning Algorithms
Rui Camacho, Rita Ferreira, Natacha Rosa, Vânia Guimarães, Nuno A. Fonseca, Vítor Santos Costa, Miguel Sousa, Alexandre Magalhães

6. A Data Mining Approach for the Detection of High-Risk Breast Cancer Groups
Orlando Anunciação, Bruno C. Gomes, Susana Vinga, Jorge Gaspar, Arlindo L. Oliveira, José Rueff

7. GRASP for Instance Selection in Medical Data Sets
Alfonso Fernández, Abraham Duarte, Rosa Hernández, Ángel Sánchez

8. Expanding Gene-Based PubMed Queries
Sérgio Matos, Joel P. Arrais, José Luis Oliveira

9. Improving Cross Mapping in Biomedical Databases
Joel Arrais, João E. Pereira, Pedro Lopes, Sérgio Matos, José Luis Oliveira

10. An Efficient Multi-class Support Vector Machine Classifier for Protein Fold Recognition
Wiesław Chmielnicki, Katarzyna Sta̧por, Irena Roterman-Konieczna

11. Feature Selection Using Multi-Objective Evolutionary Algorithms: Application to Cardiac SPECT Diagnosis
António Gaspar-Cunha

12. Two Results on Distances for Phylogenetic Networks
Gabriel Cardona, Mercè Llabrés, Francesc Rosselló

13. Cramér Coefficient in Genome Evolution
Vera Afreixo, Adelaide Freitas

14. An Application for Studying Tandem Repeats in Orthologous Genes
José Paulo Lousado, José Luis Oliveira, Gabriela Moura, Manuel A. S. Santos

15. Accurate Selection of Models of Protein Evolution
Mateus Patricio, Federico Abascal, Rafael Zardoya, David Posada

16. Scalable Phylogenetics through Input Preprocessing
Roberto Blanco, Elvira Mayordomo, Esther Montes, Rafael Mayo, Angelines Alberto

17. The Median of the Distance between Two Leaves in a Phylogenetic Tree
Arnau Mir, Francesc Rosselló

In Silico AFLP: An Application to Assess What Is Needed to Resolve a Phylogeny
María Jesús García-Pereira, Armando Caballero, Humberto Quesada

19. Employing Compact Intra-genomic Language Models to Predict Genomic Sequences and Characterize Their Entropy
Sérgio Deusdado, Paulo Carvalho

20. Structure Based Design of Potential Inhibitors of Steroid Sulfatase
Elisangela V. Costa, M. Emília Sousa, J. Rocha, Carlos A. Montanari, M. Madalena Pinto

21. Agent-Based Model of the Endocrine Pancreas and Interaction with Innate Immune System
Ignacio V. Martínez Espinosa, Enrique J. Gómez Aguilera, María E. Hernando Pérez, Ricardo Villares, José Mario Mellado García

22. State-of-the-Art Genetic Programming for Predicting Human Oral Bioavailability of Drugs
Sara Silva, Leonardo Vanneschi

23. Pharmacophore-Based Screening as a Clue for the Discovery of New P-Glycoprotein Inhibitors
Andreia Palmeira, Freddy Rodrigues, Emília Sousa, Madalena Pinto, M. Helena Vasconcelos, Miguel X. Fernandes

e-BiMotif: Combining Sequence Alignment and Biclustering to Unravel Structured Motifs
Joana P. Gonçalves, Sara C. Madeira

25. Applying a Metabolic Footprinting Approach to Characterize the Impact of the Recombinant Protein Production in Escherichia coli

Sónia Carneiro, Silas G. Villas-Bôas, Isabel Rocha, Eugénio C. Ferreira

26. Rbbt: A Framework for Fast Bioinformatics Development with Ruby
Miguel Vázquez, Rubén Nogales, Pedro Carmona, Alberto Pascual, Juan Pavón

27. Analysis of the Effect of Reversibility Constraints on the Predictions of Genome-Scale Metabolic Models
José P. Faria, Miguel Rocha, Rick L. Stevens, Christopher S. Henry

28. Enhancing Elementary Flux Modes Analysis Using Filtering Techniques in an Integrated Environment
Paulo Maia, Marcellinus Pont, Jean-François Tomb, Isabel Rocha, Miguel Rocha

29. Genome Visualization in Space
Leandro S. Marcolino, Bráulio R. G. M. Couto, Marcos A. Santos

30. A Hybrid Scheme to Solve the Protein Structure Prediction Problem
José C. Calvo, Julio Ortega, Mancia Anguita

Keywords: Engineering, Computational Intelligence, Computational Biology/Bioinformatics, Bioinformatics, Artificial Intelligence (incl. Robotics)

Publication year
Advances in Intelligent and Soft Computing
Technology, Energy, Traffic

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