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Aransay, Ana M.

Field Guidelines for Genetic Experimental Designs in High-Throughput Sequencing

Aransay, Ana M. - Field Guidelines for Genetic Experimental Designs in High-Throughput Sequencing, ebook

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ISBN: 9783319313504
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Table of contents

1. The High-Throughput Sequencing Technologies Triple-W Discussion: Why Use HTS, What Is the Optimal HTS Method to Use, and Which Data Analysis Workflow to Follow
José Luis Lavín Trueba, Ana M. Aransay

2. Whole-Genome Sequencing Recommendations
Toni Gabaldón, Tyler S. Alioto

3. Targeted DNA Region Re-sequencing
Karolina Heyduk, Jessica D. Stephens, Brant C. Faircloth, Travis C. Glenn

4. Transcriptome Profiling Strategies
Abdullah M. Khamis, Vladimir B. Bajic, Matthias Harbers

5. Differential mRNA Alternative Splicing
Albert Lahat, Sushma Nagaraja Grellscheid

6. microRNA Discovery and Expression Analysis in Animals
Bastian Fromm

7. Analysis of Long Noncoding RNAs in RNA-Seq Data
Farshad Niazi, Saba Valadkhan

8. Ribosome Profiling
Anze Zupanic, Sushma Nagaraja Grellscheid

9. Genome-Wide Analysis of DNA Methylation Patterns by High-Throughput Sequencing
Tuncay Baubec, Altuna Akalin

10. Characterization of DNA-Protein Interactions: Design and Analysis of ChIP-Seq Experiments
Rory Stark, James Hadfield

11. PAR-CLIP: A Genomic Technique to Dissect RNA-Protein Interactions
Tara Dutka, Aishe A. Sarshad, Markus Hafner

12. Metagenomic Design and Sequencing
William L. Trimble, Stephanie M. Greenwald, Sarah Owens, Elizabeth M. Glass, Folker Meyer

13. A Hitchhiker’s Guide to Metatranscriptomics
Mariana Peimbert, Luis David Alcaraz

14. Eukaryotic Single-Cell mRNA Sequencing
Kenneth J. Livak

15. Eukaryotic Single-Cell DNA Sequencing
Keith E. Szulwach, Kenneth J. Livak

16. Submitting Data to a Public Repository, the Final Step of a Successful HTS Experiment
Christopher O’Sullivan, Jonathan Trow

Keywords: Biomedicine, Human Genetics, Systems Biology, Biostatistics

Editor
 
Publisher
Springer
Publication year
2016
Language
en
Edition
1
Category
Medicine, Health Care, Mode
Format
Ebook
eISBN (PDF)
9783319313504
Printed ISBN
978-3-319-31348-1

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