High-Performance Computing Infrastructure for South East Europe's Research Communities

1. Simulation of Electron Transport Using HPC Infrastructure in South-Eastern Europe
Emanouil Atanassov, Todor Gurov, Aneta Karaivanova

2. Density Waves in Dipolar Bose-Einstein Condensates by Means of Symbolic Computations
Alexandru I. Nicolin, Ionel Rata

3. Using Parallel Computing to Calculate Static Interquark Potential in LQCD
Dafina Xhako, Rudina Zeqirllari, Artan Boriçi

4. Modelling of Disaster Spreading Dynamics
Igor Stanković, Milan Žeželj, Jelena Smiljanić, Aleksandar Belić

5. Determination of Zone of Flow Instability in a Gas Flow Past a Square Particle in a Narrow Microchannel
Kiril Shterev, Stefan Stefanov

6. Quenched Hadron Spectroscopy Using FermiQCD
Rudina Zeqirllari, Dafina Xhako, Artan Boriçi

7. Self-Avoiding Hamiltonian Walks Counting in Parallel Processing Mode
Igor Ševo, Sreten Lekić, Mihajlo Savić

8. Conformational Analysis and HF ab initio Geometry Optimization of Kyotorphine and Its Sulfo-Analogues Norsulfoarginine-Tyrosine and Tyrosine-Norsulfoarginine
Nicolay I. Dodoff, Tatyana A. Dzimbova, Tamara I. Pajpanova

9. Dynamics of Uninhibited and Covalently Inhibited Cysteine Protease on Non-physiological pH
Branko J. Drakulić, Marija Gavrović-Jankulović

10. Mechanisms of Polarization
Aggelos Avramopoulos, Heribert Reis, Manthos G. Papadopoulos

11. Some Aspects of the Comparative Study of Semi-empirical Combustion Models on FLUENT and OpenFOAM Codes
Sreten Lekić, Mihajlo Savić, Petar Gvero

12. Development of a Hybrid Statistical Physics – Quantum Mechanical Methodology for Computer Simulations of Condensed Phases and Its Implementation on High-Performance Computing Systems
Ljupčo Pejov, Dragan Sahpaski, Emilija Kohls, Anastas Mishev

13. Solvatochromic Effect for the Denaturation and Mutation Processes in DNA: Computational Study
Jumber Kereselidze, Marine Kvaraia, Zurab Pachulia, George Mikuchadze

14. Dynamic Features of Complex Systems: A Molecular Simulation Study
Armen Poghosyan, Levon Arsenyan, Hrachya Astsatryan

15. Using Adaptive Mesh Refinement Strategy for Numerical Solving of Gas Dynamics Problems on Multicore Computers
Boris Rybakin, Peter Bogatencov, Grigore Secrieru, Nicolai Iluha

16. Number Theory Algorithms on GPU Clusters
Emanouil Atanassov, Dobromir Georgiev, Nikolai Manev

17. Advanced Vulnerability Assessment Tool for Distributed Systems
Sandor Acs, Miklos Kozlovszky, Peter Kotcauer

18. Performance and Scalability Evaluation of Short Fragment Sequence Alignment Applications
Gergely Windisch, Miklos Kozlovszky, Ákos Balaskó

19. Implementation and Benchmarking of New FFT Libraries in Quantum ESPRESSO
Dušan Stanković, Petar Jovanović, Aleksandar Jović, Vladimir Slavnić, Dušan Vudragović, Antun Balaž

20. An Analysis of FFTW and FFTE Performance
Miloš Nikolić, Aleksandar Jović, Josip Jakić, Vladimir Slavnić, Antun Balaž

Keywords: Engineering, Computational Intelligence, Computational Biology/Bioinformatics, Numerical and Computational Physics, Computational Intelligence, Bioinformatics