Koch, Ina
Modeling in Systems Biology
Part I. Foundations
1. Introduction
Ina Koch, Falk Schreiber
2. Biochemical Fundamentals
Tiina Liiving, Syed M. Baker, Björn H. Junker
3. Petri Nets
Wolfgang Reisig
Part II. Modeling Techniques
4. Discrete Modeling
Andrea Sackmann
5. Modeling Genetic Regulatory Networks
Richard Banks, Victor Khomenko, L. Jason Steggles
6. Hybrid Functional Petri Net with Extension forDynamic Pathway Modeling
Ayumu Saito, Masao Nagasaki, Hiroshi Matsuno, Satoru Miyano
7. Stochastic Modeling
Ivan Mura
8. Quantitative Analysis
Jörg Ackermann, Ina Koch
9. Fuzzy Modeling
Lukas Windhager, Florian Erhard, Ralf Zimmer
Part III. Biochemical Applications
10. Topological Analysis of Metabolic andRegulatory Networks
Stefan Schuster, Björn H. Junker
11. Analysis of Dynamical Models of Signaling Networks with Petri Nets and Dynamic Graphs
Simon Hardy, Ravi Iyengar
12. A Modular, Qualitative Modeling of Regulatory Networks Using Petri Nets
Claudine Chaouiya, Hanna Klaudel, Franck Pommereau
13. A Case Study of HFPN Simulation: Finding Essential Roles ofRor Gene in the Interaction ofFeedback Loops inMammalian Circadian Clock
Natsumi Mitou, Hiroshi Matsuno, Satoru Miyano, Shin-Ichi T. Inouye
14. Prediction of Network Structure
Annegret Wagler
Keywords: Computer Science, Computational Biology/Bioinformatics, Systems Biology
- Author(s)
- Koch, Ina
- Reisig, Wolfgang
- Schreiber, Falk
- Publisher
- Springer
- Publication year
- 2011
- Language
- en
- Edition
- 1
- Series
- Computational Biology
- Page amount
- 387 pages
- Category
- Information Technology, Telecommunications
- Format
- Ebook
- eISBN (PDF)
- 9781849964746