Computational Methods for Protein Structure Prediction and Modeling

1. A Historical Perspective and Overview of Protein Structure Prediction
John C. Wooley, Yuzhen Ye

2. Empirical Force Fields
Alexander D. MacKerell

3. Knowledge-Based Energy Functions for Computational Studies of Proteins
Xiang Li, Jie Liang

4. Computational Methods for Domain Partitioning of Protein Structures
Stella Veretnik, Ilya Shindyalov

5. Protein Structure Comparison and Classification
Orhan Çamoglu, Ambuj K. Singh

6. Computation of Protein Geometry and Its Applications: Packing and Function Prediction
Jie Liang

7. Local Structure Prediction of Proteins
Victo A. Simossis, Jaap Heringa

8. Protein Contact Map Prediction
Xin Yuan, Christopher Bystroff

9. Modeling Protein Aggregate Assembly and Structure
Jun-tao Guo, Carol K. Hall, Ying Xu, Ronald Wetzel

10. Homology-Based Modeling of Protein Structure
Zhexin Xiang

11. Modeling Protein Structures Based on Density Maps at Intermediate Resolutions
Jianpeng Ma

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Keywords: SCIENCE / Physics SCI055000