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Nielsen, Rasmus

Statistical Methods in Molecular Evolution

Nielsen, Rasmus - Statistical Methods in Molecular Evolution, ebook

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ISBN: 9780387277332
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Table of contents

Part I. Introduction

1. Markov Models in Molecular Evolution
Nicolas Galtier, Olivier Gascuel, Alain Jean-Marie

2. Introduction to Applications of the Likelihood Function in Molecular Evolution
Jutta Buschbom, Arndt Haeseler

3. Introduction to Markov Chain Monte Carlo Methods in Molecular Evolution
Bret Larget

4. Population Genetics of Molecular Evolution
Carlos D. Bustamante

Part II. Practical Approaches for Data Analysis

5. Maximum Likelihood Methods for Detecting Adaptive Protein Evolution
Joseph P. Bielawski, Ziheng Yang

6. HyPhy: Hypothesis Testing Using Phylogenies
Sergei L. Kosakovsky Pond, Spencer V. Muse

7. Bayesian Analysis of Molecular Evolution Using MrBayes
John P. Huelsenbeck, Fredrik Ronquist

8. Estimation of Divergence Times from Molecular Sequence Data
Jeffrey L. Thorne, Hirohisa Kishino

Part III. Models of Molecular Evolution

9. Markov Models of Protein Sequence Evolution
Matthew W. Dimmic

10. Models of Microsatellite Evolution
Peter Calabrese, Raazesh Sainudiin

11. Genome Rearrangement
Rick Durrett

12. Phylogenetic Hidden Markov Models
Adam Siepel, David Haussler

Part IV. Inferences on Molecular Evolution

13. The Evolutionary Causes and Consequences of Base Composition Variation
Gilean A. T. McVean

14. Statistical Alignment: Recent Progress, New Applications, and Challenges
Gerton Lunter, Alexei J. Drummond, István Miklós, Jotun Hein

15. Estimating Substitution Matrices
Von Bing Yap, Terry Speed

16. Posterior Mapping and Posterior Predictive Distributions
Jonathan P. Bollback

17. Assessing the Uncertainty in Phylogenetic Inference
Hidetoshi Shimodaira, Masami Hasegawa

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Keywords: SCIENCE / Life Sciences / Biology / General SCI008000

Author(s)
Publisher
Springer
Publication year
2005
Language
en
Edition
1
Category
Natural Sciences
Format
Ebook
eISBN (PDF)
9780387277332

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