Computational and Statistical Approaches to Genomics

1. Microarray Image Analysis and Gene Expression Ratio Statistics
Yidong Chen, Edward R. Dougherty, Michael L. Bittner, Paul Meltzer, Jeffery Trent

2. Statistical Considerations in the Assessment of cDNA Microarray Data Obtained Using Amplification
Jing Wang, Kevin R. Coombes, Keith Baggerly, Limei Hu, Stanley R. Hamilton, Wei Zhang

3. Sources of Variation in Microarray Experiments
Kathleen F. Kerr, Edward H. Leiter, Laurent Picard, Gary A. Churchill

4. Studentizing Microarray Data
Keith A. Baggerly, Kevin R. Coombes, Kenneth R. Hess, David N. Stivers, Lynne V. Abruzzo, Wei Zhang

5. Exploratory Clustering of Gene Expression Profiles of Mutated Yeast Strains
Merja Oja, Janne Nikkilä, Petri Törönen, Garry Wong, Eero Castrén, Samuel Kaski

6. Selecting Informative Genes for Cancer Classification Using Gene Expression Data
Tatsuya Akutsu, Satoru Miyano

7. Finding Functional Structures in Ggioma Gene-Expressions Using Gene Shaving Clustering and MDL Principle
Ciprian D. Giurcaneanu, Cristian Mircean, Gregory N. Fuller, Ioan Tabus

8. Design Issues and Comparison of Methods for Microarray-Based Classification
Edward R. Dougherty, Sanju N. Attoor

9. Analyzing Protein Sequences Using Signal Analysis Techniques
Karen M. Bloch, Gonzalo R. Arce

10. Scale-Dependent Statistics of the Numbers of Transcripts and Protein Sequences Encoded in the Genome
Vladimir A. Kuznetsov

11. Statistical Methods in Serial Analysis of Gene Expression (Sage)
Ricardo Z. N. Vêncio, Helena Brentani

12. Normalized Maximum Likelihood Models for Boolean Regression with Application to Prediction and Classification in Genomics
Ioan Tabus, Rissanen Jorma, Jaakko Astola

13. Inference of Genetic Regulatory Networks via Best-Fit Extensions
Harri Lähdesmäki, Ilya Shmulevich, Olli Yli-Harja, Jaakko Astola

14. Regularization and Noise Injection for Improving Genetic Network Models
Eugene Someren, Lodewyk Wessels, Marcel Reinders, Eric Backer

15. Parallel Computation and Visualization Tools for Codetermination Analysis of Multivariate Gene Expression Relations
Edward B. Suh, Edward R. Dougherty, Seungchan Kim, Michael L. Bittner, Yidong Chen, Daniel E. Russ, Robert L. Martino

16. Single Nucleotide Polymorphisms and Their Applications
Rudy Guerra, Zhaoxia Yu

17. The Contribution of Alternative Transcription and Alternative Splicing to the Complexity of Mammalian Transcriptomes
Mihaela Zavolan, Christian Schönbach

18. Computational Imaging, and Statistical Analysis of Tissue Microarrays: Quantitative Automated Analysis of Tissue Microarrays
Aaron J. Berger, Robert L. Camp, David L. Rimm

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Keywords: TECHNOLOGY & ENGINEERING / Biomedical TEC059000