Krawetz, Stephen
Bioinformatics for Systems Biology
Part I. Life of a Cell and Its Analysis
1. Structure and Function of the Nucleus and Cell Organelles
Jon Holy, Ed Perkins
2. Transcription and the Control of Gene Expression
Nadine Wiper-Bergeron, Ilona S. Skerjanc
3. RNA Processing and Translation
Christina Karamboulas, Nadine Wiper-Bergeron, Ilona S. Skerjanc
4. DNA Replication, Recombination, and Repair
Linda B. Bloom
5. Cell Signaling
Daniel A. Rappolee, D. Randall Armant
6. Epigenetics of Spermiogenesis
Sophie Rousseaux, Myriam Ferro
7. Genomic Tools for Analyzing Transcriptional Regulatory Networks
John J. Wyrick
Part II. Statistical Tools and Their Application
8. Probability and Hypothesis Testing
Michael L. Kruger
9. Stochastic Models for Biological Patterns
Gautam B. Singh
10. Population Genetics
Jill S. Barnholtz-Sloan, Hemant K. Tiwari
11. Statistical Tools for Gene Expression Analysis and Systems Biology and Related Web Resources
Chiara Romualdi, Gerolamo Lanfranchi
Part III. Transcriptome Analysis
12. What Goes in is What Comes Out: How to Design and Implement a Successful Microarray Experiment
Jeffrey A. Loeb, Thomas L. Beaumont
13. Tools and Approaches for an End-to-End Expression Array Analysis
Adrian E. Platts, Stephen A. Krawetz
14. Analysis of Alternative Splicing with Microarrays
Jingyi Hui, Shivendra Kishore, Amit Khanna, Stefan Stamm
Part IV. Structural and Functional Sequence Analysis
15. An Introduction to Multiple Sequence Alignment — and the T-Coffee Shop. Beyond Just Aligning Sequences: How Good can you Make your Alignment, and so What?
Steven M. Thompson
16. A Spectrum of Phylogenetic-Based Approaches for Predicting Protein Functional Sites
Dukka Bahadur K. C., Dennis R. Livesay
17. The Role of Transcription Factor Binding Sites in Promoters and Their
Thomas Werner
18.
Panayiotis V. Benos
Part V. Literature Mining for Association and Meaning
19. Mining the Research Literature in Systems Biology
Keir T. Reavie
20. GoPubMed: Exploring PubMed with Ontological Background Knowledge
Heiko Dietze, Dimitra Alexopoulou, Michael R. Alvers, Liliana Barrio-Alvers, Bill Andreopoulos, Andreas Doms, Jörg Hakenberg, Jan Mönnich, Conrad Plake, Andreas Reischuck, Loïc Royer, Thomas Wächter, Matthias Zschunke, Michael Schroeder
21. BiblioSphere — Hypothesis Generation in Regulatory Network Analysis
Anton Epple, Matthias Scherf
22. Biological Knowledge Extraction
Florian Leitner, Robert Hoffmann, Alfonso Valencia
Part VI. Genomic Databases
23. Using KEGG in the Transition from Genomics to Chemical Genomics
Kiyoko F. Aoki-Kinoshita, Minoru Kanehisa
24. Ensembl
Anne Parker, Fiona Cunningham
25. Management of Spatially Organized Biological Data using EMAGE
Jeffrey H. Christiansen, Duncan R. Davidson, Richard A Baldock
26. Equality of the Sexes? Parent-of-Origin Effects on Transcription and
Rivka L. Glaser, Ian M. Morison
Part VII. Biological Networks
27. Methods for Structural Inference and Functional Module Identification in Intracellular Networks
Maria Manioudaki, Eleftheria Tzamali, Martin Reczko, Panayiota Poirazi
28. Methods for Dynamical Inference in Intracellular Networks
Eleftheria Tzamali, Panayiota Poirazi, Martin Reczko
29. ASIAN: Network Inference Web Server
Sachiyo Aburatani, Shigeru Saito, Katsuhisa Horimoto
Part VIII. Bridging the Gap
30. Bioinformatics for Metabolomics
David S. Wishart
31. Virtual Reality Meets Functional Genomics
Andrei L. Turinsky, Christoph W. Sensen
32. Systems Biology of Personalized Medicine
Craig Paul Webb, David Michael Cherba
Avainsanat: SCIENCE / Life Sciences / Biology / General SCI008000
- Tekijä(t)
- Krawetz, Stephen
- Julkaisija
- Springer
- Julkaisuvuosi
- 2009
- Kieli
- en
- Painos
- 1
- Kategoria
- Eksaktit luonnontieteet
- Tiedostomuoto
- E-kirja
- eISBN (PDF)
- 9781597454407