Plant Metabolomics

Section I. Analytical Technology

1. Gas Chromatography Mass Spectrometry
J. Kopka

2. Current Status and Forward Looking Thoughts on LC/MS Metabolomics
L. W. Sumner

3. Plant Metabolomics Strategies Based upon Quadrupole Time of Flight Mass Spectrometry (QTOF-MS)
H. A. Verhoeven, C. H. Ric de Vos, R. J. Bino, R. D. Hall

4. Capillary HPLC
T. Ikegami, E. Fukusaki, N. Tanaka

5. Capillary HPLC Coupled to Electrospray Ionization Quadrupole Time-of-flight Mass Spectrometry
S. Clemens, C. Böttcher, M. Franz, E. Willscher, E. Roepenack-Lahaye, D. Scheel

6. NMR Spectroscopy in Plant Metabolomics
J. L. Ward, M. H. Beale

7. Hetero-nuclear NMR-based Metabolomics
J. Kikuchi, T. Hirayama

Section II. Bioinformatics

8. Bioinformatics Approaches to Integrate Metabolomics and Other Systems Biology Data
B. Mehrotra, P. Mendes

9. Chemometrics in Metabolomics — An Introduction
J. Trygg, J. Gullberg, A. I. Johansson, P. Jonsson, T. Moritz

10. Map Editor for the Atomic Reconstruction of Metabolism (ARM)
M. Arita, Y. Fujiwara, Y. Nakanishi

11. AraCyc: Overview of an Arabidopsis Metabolism Database and its Applications for Plant Research
S. Y. Rhee, P. Zhang, H. Foerster, C. Tissier

12. KaPPA-View: A Tool for Integrating Transcriptomic and Metabolomic Data on Plant Metabolic Pathway Maps
T. Tokimatsu, N. Sakurai, H. Suzuki, D. Shibata

13. KNApSAcK: A Comprehensive Species-Metabolite Relationship Database
Y. Shinbo, Y. Nakamura, M. Altaf-Ul-Amin, H. Asahi, K. Kurokawa, M. Arita, K. Saito, D. Ohta, D. Shibata, S. Kanaya

Section III. Applications

14. Systems Biology: A Renaissance of the Top-down Approach for Plant Analysis
F. Carrari, N. Schauer, L. Willmitzer, A. R. Fernie

15. Systems-based Analysis of Plant Metabolism by Integration of Metabolomics with Transcriptomics
M. Y. Hirai, T. Tohge, K. Saito

16. Targeted Profiling of Fatty Acids and Related Metabolites
T. R. Larson, I. A. Graham

17. Metabolic Profiling and Quantification of Carotenoids and Related Isoprenoids in Crop Plants
P. D. Fraser, P. M. Bramley

18. Metabolomics and Gene Identification in Plant Natural Product Pathways
R. A. Dixon, L. Achnine, B. E. Deavours, M. Naoumkina

19. Metabolomic Analysis of Catharanthus roseus Using NMR and Principal Component Analysis
H. K. Kim, Y. H. Choi, R. Verpoorte

20. Metabolomics of Plant Secondary Compounds: Profiling of Catharanthus Cell Cultures
M. Orešic, H. Rischer, K. -M. Oksman-Caldentey

21. The Taxus Metabolome and the Elucidation of the Taxol® Biosynthetic Pathway in Cell Suspension Cultures
R. E. B. Ketchum, R. B. Croteau

22. The Use of Non-targeted Metabolomics in Plant Science
T. Daskalchuk, P. Ahiahonu, D. Heath, Y. Yamazaki

23. Plant Metabolite Profiling for Industrial Applications
R. N. Trethewey

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Keywords: SCIENCE / Life Sciences / Biology / General SCI008000