Computational Diffusion MRI and Brain Connectivity

Part I. Acquisition of Diffusion MRI

1. Comparing Simultaneous Multi-slice Diffusion Acquisitions
Yogesh Rathi, Borjan Gagoski, Kawin Setsompop, P. Ellen Grant, C.-F. Westin

2. Effect of Data Acquisition and Analysis Method on Fiber Orientation Estimation in Diffusion MRI
Bryce Wilkins, Namgyun Lee, Vidya Rajagopalan, Meng Law, Natasha Leporé

3. Model-Based Super-Resolution of Diffusion MRI
Alexandra Tobisch, Peter F. Neher, Matthew C. Rowe, Klaus H. Maier-Hein, Hui Zhang

4. A Quantitative Evaluation of Errors Induced by Reduced Field-of-View in Diffusion Tensor Imaging
Jan Hering, Ivo Wolf, Hans-Peter Meinzer, Bram Stieltjes, Klaus H. Maier-Hein

Part II. Diffusion MRI Modeling

5. The Diffusion Dictionary in the Human Brain Is Short: Rotation Invariant Learning of Basis Functions
Marco Reisert, Henrik Skibbe, Valerij G. Kiselev

6. Diffusion Propagator Estimation Using Radial Basis Functions
Yogesh Rathi, Marc Niethammer, Frederik Laun, Kawin Setsompop, Oleg Michailovich, P. Ellen Grant, C.-F. Westin

7. A Framework for ODF Inference by Using Fiber Tract Adaptive MPG Selection
Hidekata Hontani, Kazunari Iwamoto, Yoshitaka Masutani

8. Non-negative Spherical Deconvolution (NNSD) for Fiber Orientation Distribution Function Estimation
Jian Cheng, Rachid Deriche, Tianzi Jiang, Dinggang Shen, Pew-Thian Yap

Part III. Tractography

9. A Novel Riemannian Metric for Geodesic Tractography in DTI
Andrea Fuster, Antonio Tristan-Vega, Tom Dela Haije, Carl-Fredrik Westin, Luc Florack

10. Fiberfox: An Extensible System for Generating Realistic White Matter Software Phantoms
Peter F. Neher, Frederik B. Laun, Bram Stieltjes, Klaus H. Maier-Hein

11. Choosing a Tractography Algorithm: On the Effects of Measurement Noise
Andre Reichenbach, Mario Hlawitschka, Marc Tittgemeyer, Gerik Scheuermann

12. Uncertainty in Tractography via Tract Confidence Regions
Colin J. Brown, Brian G. Booth, Ghassan Hamarneh

13. Estimating Uncertainty in White Matter Tractography Using Wild Non-local Bootstrap
Pew-Thian Yap, Hongyu An, Yasheng Chen, Dinggang Shen

Part IV. Group Studies and Statistical Analysis

14. Groupwise Deformable Registration of Fiber Track Sets Using Track Orientation Distributions
Daan Christiaens, Thijs Dhollander, Frederik Maes, Stefan Sunaert, Paul Suetens

15. Groupwise Registration for Correcting Subject Motion and Eddy Current Distortions in Diffusion MRI Using a PCA Based Dissimilarity Metric
W. Huizinga, C. T. Metz, D. H. J. Poot, M. Groot, W. J. Niessen, A. Leemans, S. Klein

16. Fiber Based Comparison of Whole Brain Tractographies with Application to Amyotrophic Lateral Sclerosis
Gali Zimmerman-Moreno, Dafna ben Bashat, Moran Artzi, Beatrice Nefussy, Vivian Drory, Orna Aizenstein, Hayit Greenspan

17. Statistical Analysis of White Matter Integrity for the Clinical Study of Typical Specific Language Impairment in Children
Emmanuel Vallée, Olivier Commowick, Camille Maumet, Aymeric Stamm, Elisabeth Le Rumeur, Catherine Allaire, Jean-Christophe Ferré, Clément Guibert, Christian Barillot

Part V. Brain Connectivity

18. Disrupted Brain Connectivity in Alzheimer’s Disease: Effects of Network Thresholding
Madelaine Daianu, Emily L. Dennis, Neda Jahanshad, Talia M. Nir, Arthur W. Toga, Clifford R. Jack, Michael W. Weiner, Paul M. Thompson

19. Rich Club Analysis of Structural Brain Connectivity at 7 Tesla Versus 3 Tesla
Emily L. Dennis, Liang Zhan, Neda Jahanshad, Bryon A. Mueller, Yan Jin, Christophe Lenglet, Essa Yacoub, Guillermo Sapiro, Kamil Ugurbil, Noam Harel, Arthur W. Toga, Kelvin O. Lim, Paul M. Thompson

20. Coupled Intrinsic Connectivity: A Principled Method for Exploratory Analysis of Paired Data
Dustin Scheinost, Xilin Shen, Emily Finn, Rajita Sinha, R. Todd Constable, Xenophon Papademetris

21. Power Estimates for Voxel-Based Genetic Association Studies Using Diffusion Imaging
Neda Jahanshad, Peter Kochunov, David C. Glahn, John Blangero, Thomas E. Nichols, Katie L. McMahon, Greig I. Zubicaray, Nicholas G. Martin, Margaret J. Wright, Clifford R. Jack, Matt A. Bernstein, Michael W. Weiner, Arthur W. Toga, Paul M. Thompson

22. Global Changes in the Connectome in Autism Spectrum Disorders
Caspar J. Goch, Basak Oztan, Bram Stieltjes, Romy Henze, Jan Hering, Luise Poustka, Hans-Peter Meinzer, Bülent Yener, Klaus H. Maier-Hein

Keywords: Mathematics, Computational Science and Engineering, Image Processing and Computer Vision, Visualization, Pattern Recognition, Theoretical, Mathematical and Computational Physics, Statistics for Life Sciences, Medicine, Health Sciences